After a few evenings chasing this intermittent fault, I thought I finally had solved it when I sprayed some Detoxit gold on a couple of the channel 2 input preamp selector switches and it snapped back to life. The next day while moving back to bring up of the O-scope interface, channel two failed again, this time appearing to be completely dead. This was actually good news, because a solid failure can be easier to debug than an intermittent failure.
This morning I figured out that there was a short between an input capacitor case ground and chassis ground.
Scraping the debris from between the capacitor ground and nearby chassis ground seems to have rectified the issue, hopefully for good. Having a good working channel to compare the bad channel with, made this repair easier than it otherwise might have been.